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Analysing and optimizing Snphap using Radix-2 computation and Openmp

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เครือข่ายคณะผู้วิจัย


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Abstract

In this paper, the Run time complexity of Snphap, which is a Haplotype inference tool, is extensively examined. The analysis is based on our previous work in terms of profiling and run-time complexity function. To reduce the Run time complexity and enhance its performance, a Radix-2 computation and Openmp multithreading are applied. The optimized results are compared with both original and compiler optimized versions on an AMD A6-3650 Linux machine. Due to the Radix-2 technique, the complexity is drastically reduced. In addition, the theoretical Speedup is consistent with the experimental one. Furthermore, up to 1,303% Speedup is achievable as a result of Openmp multithreading.

Haplotype inference (4 items found) | Run time complexity (2 items found) | Radix-2 (1 items found) | Openmp (17 items found) | Snphap (2 items found) | Application programming interfaces | Computer operating systems | SnphapComplexity functions | Computer science | Multi-threading | Linux machines | Multitasking | Optimization | Radix 2 | API |

ต้นฉบับข้อมูล : scopus